| 1 | Adil Jelloul (Mar) Morocco | 20:31:56 |
| 2 | Abdelaati Saadoune (Mar) Morocco | 0:04:28 |
| 3 | Tarik Chaoufi (Mar) Morocco | 0:08:20 |
| 4 | Adrien Niyonshuti (Rwa) KAR | 0:08:23 |
| 5 | Mohamed Erragragui (Mar) Morocco | 0:09:28 |
| 6 | Abraham Ruhumuriza (Rwa) KAR | 0:11:07 |
| 7 | Zakayo Nderi (Ken) Kenya | 0:11:41 |
| 8 | Nicodem Habiyambere (Rwa) KAR | 0:15:57 |
| 9 | Jean De Dieu Uwimana (Rwa) AKA | 0:16:02 |
| 10 | Mouhcine Lahsaini (Mar) Morocco | 0:19:01 |
| 11 | Nathan Byukusenge (Rwa) KAR | 0:21:25 |
| 12 | Samwel Mwangi (Ken) Kenya | 0:23:35 |
| 13 | Emanuel Rudahunga (Rwa) AKA | 0:24:56 |
| 14 | Eugène Lokossué (CIv) Ivory Coast | 0:26:18 |
| 15 | Timo Scholz (Ger) CAS | 0:31:23 |
| 16 | Samwel Ekiru (Ken) Kenya | 0:34:27 |
| 17 | Daniel Korevaar (Ned) GLO | 0:40:35 |
| 18 | Obedi Ruvogera (Rwa) KAR | 0:42:31 |
| 19 | Edgar Tavares (Por) CAS | 0:45:29 |
| 20 | Damien Tekou Fokou (Cmr) Cameroon | 0:45:34 |
| 21 | Erik Andrea (Ned) GLO | 0:48:03 |
| 22 | Ismail Ayoune (Mar) Morocco | 0:55:22 |
| 23 | Innocent Nshimiyimana (Rwa) AKA | 1:00:01 |
| 24 | Nyandwi Uwase (Rwa) KAR | 1:00:48 |
| 25 | Hillary Kiprotich (Ken) Kenya | 1:05:56 |
| 26 | Innocent Sibomana (Rwa) AKA | 1:14:57 |
| 27 | Dirk Oude Ophuis (Ned) GLO | 1:18:29 |
| 28 | Jean De Dieu Nkurunziza (Rwa) AKA | 1:22:55 |
| 29 | Flavio Pasquino (Ned) GLO | 1:31:11 |
| 30 | Benjamin Trouche (Fra) CAS | 2:12:24 |
| 31 | Bolodigui Ouattara (CIv) Ivory Coast | 2:13:25 |
| 32 | Thijs Poelstra (Ned) GLO | 2:17:53 |
| 33 | Sando Simo (Cmr) Cameroon | 2:30:36 |
| 34 | Ghislain Ndong (Gab) Gabon | 2:31:45 |
| 35 | David Matovu (Uga) Uganda | 2:38:10 |
| 36 | Gasore Hategeka (Rwa) AKA | 2:40:11 |
| 37 | Daniel Alikisente (Uga) Uganda | 2:48:16 |
| 38 | Sebastian Kigongo (Uga) Uganda | 2:58:30 |
| 39 | Achilese Katumba (Uga) Uganda | 3:15:13 |
| 40 | Eric Ngomegnik (Cmr) Cameroon | 3:20:58 |
| 41 | N'Zarama Kouamé (CIv) Ivory Coast | 3:59:54 |
| 42 | Ahmed Ouedraogo (CIv) Ivory Coast | 4:11:07 |
| 43 | Franklin Nguimkeng (Cmr) Cameroon | 4:27:48 |
| 44 | Leone Matovu (Uga) Uganda | 4:28:49 |
| 45 | Gaël Nzougue (Gab) Gabon | 4:31:58 |
| 46 | David Ndjassy Nombo (Gab) Gabon | 4:40:45 |
| 47 | Gérard Bukuru (Bdi) Burundi | 4:44:45 |
| 48 | Arnaud Ontsassi (Gab) Gabon | 4:47:31 |
| 49 | Charles Bucumi (Bdi) Burundi | 5:11:30 |
