| 1 | Fumiyuki Beppu (Team RadioShack) | 0:37:39 |
| 2 | Junya Sano (d'Angelo & Antenucci - Nippo) | 0:00:20 |
| 3 | Ryota Nishizono (Shimano Racing Team) | 0:00:54 |
| 4 | Shinichi Fukushima (Terengganu Cycling Team) | 0:01:23 |
| 5 | Takayuki Abe | 0:01:39 |
| 6 | Taiji Nishitani (Aisan Racing Team) | 0:01:43 |
| 7 | Kazuhiro Mori (Aisan Racing Team) | 0:01:52 |
| 8 | Jumpei Murakami (Shimano Racing Team) | 0:02:29 |
| 9 | Yoshiyuki Shimizu (Bridgestone Anchor) | 0:02:30 |
| 10 | Keita Tanaka | 0:02:46 |
| 11 | Kaoru Obata | 0:02:47 |
| 12 | Nara Motoi (Terengganu Cycling Team) | 0:02:50 |
| 13 | Kengo Kowatari | 0:02:53 |
| 14 | Komuro Masanari | 0:02:58 |
| 15 | Masaru Fukuhara (Bridgestone Anchor) | 0:03:05 |
| 16 | Akira Kakinuma (Utsunomiya Blitzen) | 0:03:08 |
| 17 | Hikaru Kosaka (Utsunomiya Blitzen) | 0:03:24 |
| 18 | Masahiro Shinagawa (Aisan Racing Team) | Row 17 - Cell 2 |
| 19 | Syota Tsujimoto | 0:03:50 |
| 20 | Shinpei Fukuda (Aisan Racing Team) | Row 19 - Cell 2 |
| 21 | Syuntarou Yamakawa | 0:03:57 |
| 22 | Makoto Fujiwara | 0:04:10 |
| 23 | Kenji Itami (Bridgestone Anchor) | 0:04:14 |
| 24 | Jun Yamazaki | 0:04:53 |
| 25 | Wataru Otsuka | 0:09:46 |
